Two top-level folders (only one has file content available) #1

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opened 2025-05-08 17:09:31 +00:00 by msz · 0 comments

msz commented

2025-05-08 17:09:31 +00:00

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Looking at the folder structure, the folders (corresponding to dicom series) under TRR379_Q01... and TRR379_Q02... are the same, but the number of files is larger for TRR379_Q02.

Here's git annex info output for both folders (after getting all available files):

❱ git annex info TRR379_Q01_phantom_TRR379_Q01_phantom_20000101
directory: TRR379_Q01_phantom_TRR379_Q01_phantom_20000101
local annex keys: 293
local annex size: 1.02 gigabytes
annexed files in working tree: 293
size of annexed files in working tree: 1.02 gigabytes
numcopies stats:
        numcopies +2: 293
repositories containing these files: 3
        1.02 GB: 7bb29664-902b-4d23-a487-aa8c2b450bcb
        1.02 GB: 8be2883e-74b8-4bb1-bfd5-03b3f37fa4f3 -- git@5ec3590dee07:/var/lib/gitea/git/repositories/q01/phantom-mri-dicom-mannheim.git [origin]
        1.02 GB: f6f516df-7317-4247-a3f4-d3f3e48c6e76 -- mszczepanik@bnbnb64:~/Documents/trr-dicom-playground/phantom-mri-dicom-mannheim [here]
combined size of repositories containing these files: 3.06 gigabytes

❱ git annex info TRR379_Q02_phantom_TRR379_Q02_phantom_20000101
directory: TRR379_Q02_phantom_TRR379_Q02_phantom_20000101
local annex keys: 0
local annex size: 0 bytes
annexed files in working tree: 1538
size of annexed files in working tree: 3.3 gigabytes
numcopies stats:
        numcopies -1: 1538
repositories containing these files: 0
combined size of repositories containing these files: 0 bytes

While looking at potential homogenization of BIDS conversion pipelines across sites, I noticed that the files from the TRR379_Q02... folder are not available in this Forgejo instance, and no other location known to git-annex. Is that intentional? Looking at the folder structure, the folders (corresponding to dicom series) under TRR379_Q01... and TRR379_Q02... are the same, but the number of files is larger for TRR379_Q02. Here's `git annex info` output for both folders (after getting all available files): ``` ❱ git annex info TRR379_Q01_phantom_TRR379_Q01_phantom_20000101 directory: TRR379_Q01_phantom_TRR379_Q01_phantom_20000101 local annex keys: 293 local annex size: 1.02 gigabytes annexed files in working tree: 293 size of annexed files in working tree: 1.02 gigabytes numcopies stats: numcopies +2: 293 repositories containing these files: 3 1.02 GB: 7bb29664-902b-4d23-a487-aa8c2b450bcb 1.02 GB: 8be2883e-74b8-4bb1-bfd5-03b3f37fa4f3 -- git@5ec3590dee07:/var/lib/gitea/git/repositories/q01/phantom-mri-dicom-mannheim.git [origin] 1.02 GB: f6f516df-7317-4247-a3f4-d3f3e48c6e76 -- mszczepanik@bnbnb64:~/Documents/trr-dicom-playground/phantom-mri-dicom-mannheim [here] combined size of repositories containing these files: 3.06 gigabytes ❱ git annex info TRR379_Q02_phantom_TRR379_Q02_phantom_20000101 directory: TRR379_Q02_phantom_TRR379_Q02_phantom_20000101 local annex keys: 0 local annex size: 0 bytes annexed files in working tree: 1538 size of annexed files in working tree: 3.3 gigabytes numcopies stats: numcopies -1: 1538 repositories containing these files: 0 combined size of repositories containing these files: 0 bytes ```

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q01/phantom-mri-dicom-mannheim#1

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