q01/phantom-mri-dicoms
22
0
Fork 0
Code Issues Pull requests 1 Projects Releases Packages Wiki Activity Actions

Fix DWI fieldmap handling #1

Open
msz wants to merge 1 commit from fix-dwi-fmap into main
pull from: fix-dwi-fmap
merge into: q01:main
Conversation 0 Commits 1 Files changed 1 +4 -4
1 changed files with 4 additions and 4 deletions
Download patch file Download diff file Expand all files Collapse all files

8
code/heuristic-q01.py
View file

@ -47,10 +47,10 @@ def infotodict(
restvidn = create_key("{bids_subject_session_dir}/func/{bids_subject_session_prefix}_task-restvidn_bold") restvidn = create_key("{bids_subject_session_dir}/func/{bids_subject_session_prefix}_task-restvidn_bold")
fmap_ap = create_key("{bids_subject_session_dir}/fmap/{bids_subject_session_prefix}_dir-ap_run-{item}_epi") fmap_ap = create_key("{bids_subject_session_dir}/fmap/{bids_subject_session_prefix}_dir-ap_run-{item}_epi")
fmap_pa = create_key("{bids_subject_session_dir}/fmap/{bids_subject_session_prefix}_dir-pa_run-{item}_epi") fmap_pa = create_key("{bids_subject_session_dir}/fmap/{bids_subject_session_prefix}_dir-pa_run-{item}_epi")
dwi_b1200 = create_key("{bids_subject_session_dir}/dwi/{bids_subject_session_prefix}_acq-b1200_dwi") dwi_b1200 = create_key("{bids_subject_session_dir}/dwi/{bids_subject_session_prefix}_acq-b1200_dir-PA_dwi")
ref_b1200 = create_key("{bids_subject_session_dir}/dwi/{bids_subject_session_prefix}_acq-b1200_sbref") ref_b1200 = create_key("{bids_subject_session_dir}/fmap/{bids_subject_session_prefix}_acq-b1200_dir-AP_epi")
dwi_mshell = create_key("{bids_subject_session_dir}/dwi/{bids_subject_session_prefix}_acq-mshell_dwi") dwi_mshell = create_key("{bids_subject_session_dir}/dwi/{bids_subject_session_prefix}_acq-mshell_dir-PA_dwi")
ref_mshell = create_key("{bids_subject_session_dir}/dwi/{bids_subject_session_prefix}_acq-mshell_sbref") ref_mshell = create_key("{bids_subject_session_dir}/fmap/{bids_subject_session_prefix}_acq-mshell_dir-AP_epi")
# generate fieldmap keys with fixed run labels for explicitly declared runs # generate fieldmap keys with fixed run labels for explicitly declared runs
fmap_explicit_keys = { fmap_explicit_keys = {