q02/heudiconv-container
9
0
Fork 0
Code Issues Pull requests Releases Packages 1 Activity Actions

Prevent apptainer from mounting user's home directory #2

Merged
mih merged 1 commit from nohome into main 2025-09-09 17:39:04 +00:00
Conversation 0 Commits 1 Files changed 1 +1 -1
1 changed files with 1 additions and 1 deletions
Download patch file Download diff file Expand all files Collapse all files

2
.datalad/config
View file

@ -5,4 +5,4 @@
cmdexec = {python} -m datalad_container.adapters.docker run {img} {cmd}
[datalad "containers.apptainer"]
image = apptainer/nipy-heudiconv--1.3.3.sing
cmdexec = apptainer exec {img} bash -c 'PATH=/opt/dcm2niix-v1.0.20240202/bin:$PATH /opt/miniconda-py39_4.12.0/bin/heudiconv {cmd}'
cmdexec = apptainer exec --no-home {img} bash -c 'PATH=/opt/dcm2niix-v1.0.20240202/bin:$PATH /opt/miniconda-py39_4.12.0/bin/heudiconv {cmd}'