q02/heudiconv-container
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Prevent apptainer from mounting user's home directory #2

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mih merged 1 commit from nohome into main 2025-09-09 17:39:04 +00:00
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.datalad/config
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@ -5,4 +5,4 @@
cmdexec = {python} -m datalad_container.adapters.docker run {img} {cmd} cmdexec = {python} -m datalad_container.adapters.docker run {img} {cmd}
[datalad "containers.apptainer"] [datalad "containers.apptainer"]
image = apptainer/nipy-heudiconv--1.3.3.sing image = apptainer/nipy-heudiconv--1.3.3.sing
cmdexec = apptainer exec {img} bash -c 'PATH=/opt/dcm2niix-v1.0.20240202/bin:$PATH /opt/miniconda-py39_4.12.0/bin/heudiconv {cmd}' cmdexec = apptainer exec --no-home {img} bash -c 'PATH=/opt/dcm2niix-v1.0.20240202/bin:$PATH /opt/miniconda-py39_4.12.0/bin/heudiconv {cmd}'