Update the MRI section, fix typos #14

Merged

j.goddard merged 3 commits from msz/docs.trr379.de:restructure-mri into restructure

2026-08-06 10:50:00 +00:00

msz commented

2026-07-31 15:27:39 +00:00

Contributor

This updates the MRI section, mostly by cutting outdated or no longer relevant things.

I hope "stacked" PR (onto the restructure branch) is not frowned upon; I can not push to the Q04 repo, but this PR is effectively a logical extension of #13. @j.goddard please deal with it the way you prefer (rebase, cherry pick, tell me to do something else..)

This updates the MRI section, mostly by cutting outdated or no longer relevant things. I hope "stacked" PR (onto the restructure branch) is not frowned upon; I can not push to the Q04 repo, but this PR is effectively a logical extension of #13. @j.goddard please deal with it the way you prefer (rebase, cherry pick, tell me to do something else..)

msz added 3 commits

2026-07-31 15:27:39 +00:00

Remove page about DICOM archival a146728c3a

This page is more of a historical record as it contained a proposal
for a particular solution. At the time of writing, it was included in
the docs for better visibility, but now feels outdated. AFAIK all
sites have now adapted their workflows to their preferences, but I am
not privy to the details.

Rewrite the BIDS conversion page 9312103e7a

The BIDS conversion page contained a mix of general statements and
fine details (reflecting open discussions at the time of writing).

Now, considering the "less is more" principle, the introduction is
kept, but the other sections are changed to communicate the following:

- selected tooling (heudiconv / dcm2niix), what id does
- shared resources (public repos, reused across sites)
- DataLad layout of a BIDS dataset (what subdatasets and why)

Fix typos found with codespell bef390a02b